Maturation Dynamics of Bacteriophage HK97 Capsid

A.J. Rader, Daniel H. Vlad and Ivet Bahar, Structure (Camb), 2005 Mar;13(3):413-21 , 2005.
(Additional work currently in progress with Yongmei Wang)

GNM mobilities of the complete structure (left) and of the coarse-grained structure, every 40th residue, (right) (a: head mode 1, b: head mode 2,   c: prohead mode 1, prohead mode 4).

  Introduction

   Theory & Methods

  • We employed general elastic network analysis using: 

    • Gaussian Network Model (GNM)

    • Anisotropic Network Model (ANM)

  • Additionally, due to the size of these structures  (~105 residues), we employed two different application to the above elastic networks:

   Results

   Conclusions

  • Maturation proceeds by the covalent linking of a highly flexible residue (Lys169) to a highly constrained residue (Asn356), forming a stabilizing anchor.

 

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