GraphVelo: python package for inferring velocities from multi-modal single cell data needed for subsequent Dynamo analyses.
Dynamo: python package for reconstructing transcriptomic vector field from single cell RNA-seq data (referring Qiu et al. Cell)
mosaic-picasso: python package for accurate crosstalk removal for multiplex fluorescence imaging
LiveCellX: python package for live-cell imaging analyses, which replaces M-Track.
M-Track: Python package for live cell imaging analyses (see Wang et al. Sci Adv)
Xing lab addgene site: Plasmids for CRISPR knockin (see Chen et. al. Biol. Methods Protoc)
Recorded talks:
Xing’s 2025 APS March Meeting talk on chromosome folding
Xing’s 2022 Harvard Theory Lunch talk
Xing’s 2022 ClubNanothermodynamica talk (in Chinese)
Xing’s 2021 bppb seminar
Xing’s 2021 BIRS talk
Weikang’s 2021 SLAAM seminar
Xing’s 2020 Harvard Theory Lunch talk