Softwares
GraphVelo: python package for inferring velocities from multi-modal single cell data needed for subsequent Dynamo analyses.
Dynamo: python package for reconstructing transcriptomic vector field from single cell RNA-seq data (referring Qiu et al. Cell)
mosaic-picasso: python package for accurate crosstalk removal for multiplex fluorescence imaging
LiveCellX: python package for live-cell imaging analyses, which replaces M-Track.
M-Track: Python package for live cell imaging analyses (see Wang et al. Sci Adv)
Xing lab addgene site: Plasmids for CRISPR knockin (see Chen et. al. Biol. Methods Protoc)
CHECK MORE on Xing lab github site
Talks
Jianhua’s 2025 APS March Meeting talk (chromosome folding)
Jianhua’s 2024 TEMTIA XI talk
Jianhua’s 2023 BIRS talk
Jianhua’s 2022 Harvard Theory Lunch talk
CQB center/PKU 2022 workshop
Jianhua’s 2022 ClubNanothermodynamica talk (in Chinese)
Jianhua’s 2021 bppb seminar
Jianhua’s 2021 BIRS talk
Weikang’s 2021 SLAAM seminar
Jianhua’s 2020 Harvard Theory Lunch talk